These gluten-free pumpkin muffins deliver incredible moistness and warm fall flavors in every bite. Made with real pumpkin puree and Eastern Shore honey, this easy recipe comes together in just 35 minutes and creates perfectly fluffy muffins that taste amazing whether you follow a gluten-free diet or not.
These moist gluten-free pumpkin muffins pair beautifully with honey butter and make an excellent choice for breakfast on-the-go or afternoon snacking. The combination of pumpkin spice and natural honey creates a comforting flavor that captures the essence of fall in every bite.
Why This Gluten-Free Pumpkin Muffin Recipe Works
What makes these honey pumpkin muffins special? We use gfJules™ All Purpose Gluten-Free Flour, which creates the perfect texture without any grittiness. The secret is in our sweetener combination—we blend honey with brown sugar for optimal moisture and that signature caramelized flavor that makes these muffins irresistible.
When substituting honey for sugar in gluten-free baking, we've learned that including some brown sugar improves the chemistry. The molasses in brown sugar helps create that perfect moist crumb while the honey adds natural sweetness and keeps the muffins fresh longer.
Our limited edition Cranberry Honey works beautifully in this recipe, adding a subtle tangy sweetness that perfectly complements the warm pumpkin spices and creates a more complex flavor profile.

Essential Ingredients for Perfect Gluten-Free Pumpkin Muffins
- Pumpkin Puree: Use pure pumpkin puree, not pumpkin pie filling
- gfJules™ All Purpose Gluten-Free Flour: Our preferred brand for best texture
- Eastern Shore Honey: Raw, unfiltered honey works best
- Brown Sugar: Essential for moisture and caramelization
- Eggs: Room temperature eggs mix more easily
- Coconut Oil: Can substitute with melted butter
- Water: Helps achieve perfect consistency
- Baking Powder: For proper rise
- Baking Soda: Prevents burning when baking with honey
- Ground Cinnamon
- Pumpkin Pie Spice
- Kosher Salt
How to Make Moist Gluten-Free Pumpkin Muffins
Step 1: Prepare Your Pan
Preheat oven to 325°F. Line a 12-cup muffin pan with paper liners or grease with coconut oil and dust with gluten-free flour.
Step 2: Mix Wet Ingredients
In a large bowl or using a blender, combine eggs, pumpkin puree, honey, coconut oil, water, and brown sugar. Blend until smooth and well combined.
Step 3: Combine Dry Ingredients
In a separate bowl, whisk together gluten-free flour, baking powder, baking soda, salt, cinnamon, and pumpkin pie spice until evenly distributed.
Step 4: Combine and Fill
Gradually fold dry ingredients into wet ingredients, mixing just until combined. Don't overmix. Divide batter evenly between muffin cups, filling each about ¾ full.
Step 5: Bake to Perfection
Bake for 20-25 minutes, or until a toothpick inserted in center comes out clean. Cool in pan for 5 minutes before transferring to a wire rack.

Serving Suggestions & Variations
These easy gluten-free pumpkin muffins taste incredible warm from the oven with a pat of honey butter or a drizzle of raw honeycomb. For extra indulgence, try these delicious additions:
- Chocolate chips: Fold in ¾ cup mini chocolate chips for extra sweetness
- Chopped pecans: Add ½ cup for delightful crunch and nutty flavor
- Cream cheese frosting: Perfect for special occasions
- Streusel topping: Mix 2 tbsp gluten-free flour, 2 tbsp brown sugar, and 1 tbsp cold butter
Storage Tips for Maximum Freshness
Store these moist gluten-free pumpkin muffins in an airtight container at room temperature for up to 5 days. For longer storage, wrap individually in plastic wrap and freeze for up to 3 months. Thaw overnight in the refrigerator or microwave for 20-30 seconds until warmed through.
Embrace Fall Flavors Beyond Baking
While you're enjoying the cozy pumpkin scent from baking, extend that seasonal experience with our Harvest Body Care Duo. This pumpkin-scented body butter and scrub set lets you feel the warmth of fall from the inside out.
For more autumn inspiration, explore our complete Autumn Prosperity collection or try our Autumn Harvest Bundle for the ultimate seasonal experience.
More Delicious Pumpkin Recipe Ideas
Can't get enough pumpkin? Neither can we! Try these complementary recipes and other fall desserts that pair beautifully with your gluten-free pumpkin muffins:
- Honey Pumpkin Pie - Classic dessert with honey sweetness
- Pumpkin Smoothie - Perfect breakfast companion
- Honey Caramel Sauce - Delicious muffin topping
- Pumpkin Espresso Martini - Evening treat for adults

Recipe Notes & Tips
Flour Substitutions: This recipe works specifically with gfJules™ flour. Other gluten-free flour blends may require adjustments to liquid ratios.
Honey Varieties: While any honey works, we especially love Cranberry Honey for its unique tangy sweetness that adds depth and complexity to complement the pumpkin and spice flavors.
Make-Ahead Tips: Muffin batter can be prepared the night before and stored covered in the refrigerator. Add 2-3 extra minutes to baking time if using cold batter.
Mini Muffin Option: This recipe makes approximately 24 mini muffins. Reduce baking time to 12-15 minutes.
Frequently Asked Questions
Can I make these dairy-free?
Yes! The coconut oil makes these naturally dairy-free. Just ensure your honey is vegan-certified if following a strict vegan diet.
How do I know when the muffins are done?
A toothpick inserted in the center should come out clean, and the tops should spring back lightly when touched.
Can I use fresh pumpkin instead of canned?
Absolutely! Use 1¾ cups fresh pumpkin puree. Make sure to drain excess moisture by placing puree in a fine-mesh strainer for 30 minutes before using.
Why do my muffins sink in the middle?
This usually happens from overmixing the batter or opening the oven door too early. Mix just until ingredients are combined and avoid opening the oven for the first 15 minutes of baking.
